dr. M. (Mariliis) Tark-Dame

  • Faculty of Science
    Swammerdam Institute for Life Sciences
  • Visiting address
    Science Park A
    Science Park 904  Room number: C2.108
  • Postal address:
    Postbus  94215
    1090 GE  Amsterdam
  • m.tark@uva.nl


  • Brocken, D. J. W., Tark-Dame, M., & Dame, R. T. (2018). dCas9: A Versatile Tool For Epigenome Editing. Current Isues in Molecular Biology, 26, 15-32. DOI: 10.21775/cimb.026.015  [details] 


  • Anggoro, D. T., Tark-Dame, M., Walmsley, A., Oka, R., de Sain, M., & Stam, M. (2017). BIBAC-GW-based vectors for generating reporter lines for site-specific genome editing in planta. Plasmid, 89, 27-36. DOI: 10.1016/j.plasmid.2016.12.002  [details] 


  • Dame, R. T., & Tark-Dame, M. (2016). Bacterial chromatin: converging views at different scales. Current opinion in cell biology, 40, 60-65. DOI: 10.1016/j.ceb.2016.02.015 


  • Tark-Dame, M., Jerabek, H., Manders, E. M. M., Heermann, D. W., & van Driel, R. (2014). Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling. PLoS Computational Biology, 10(10), e1003877. DOI: 10.1371/journal.pcbi.1003877  [details] 
  • Chen, X., Yammine, S., Shi, C., Tark-Dame, M., Göndör, A., & Ohlsson, R. (2014). The visualization of large organized chromatin domains enriched in the H3K9me2 mark within a single chromosome in a single cell. Epigenetics, 9(11), 1439-1445. DOI: 10.4161/15592294.2014.971633  [details] 


  • Tark-Dame, M., Luijsterburg, M. S., Heermann, D. W., & van Driel, R. (2012). Understanding genome function: quantitative modeling of chromatin folding and chromatin-associated processes. In K. Rippe (Ed.), Genome organization and function in the cell nucleus (pp. 535-555). Weinheim: Wiley-VCH. DOI: 10.1002/9783527639991.ch20  [details] 


  • Tark-Dame, M., van Driel, R., & Heermann, D. W. (2011). Chromatin folding - from biology to polymer models and back. Journal of Cell Science, 124(6), 839-845. DOI: 10.1242/jcs.077628  [details] 
  • Dame, R. T., Tark-Dame, M., & Schiessel, H. (2011). A physical approach to segregation and folding of the Caulobacter crescentus genome. Molecular Microbiology, 82(6), 1311-1315. DOI: 10.1111/j.1365-2958.2011.07898.x  [details] 
  • Sidorenko, J., Jatsenko, T., Saumaa, S., Teras, R., Tark-Dame, M., Horak, R., & Kivisaar, M. (2011). Involvement of specialized DNA polymerases Pol II, Pol IV and DnaE2 in DNA replication in the absence of Pol I in Pseudomonas putida. Mutation Research, 714(1-2), 63-77. DOI: 10.1016/j.mrfmmm.2011.06.013 


  • Tarassova, K., Tegova, R., Tover, A., Teras, R., Tark, M., Saumaa, S., & Kivisaar, M. (2009). Elevated mutation frequency in surviving populations of carbon-starved rpoS-deficient Pseudomonas putida is caused by reduced expression of superoxide dismutase and catalase. Journal of Bacteriology, 191(11), 3604-3614. DOI: 10.1128/JB.01803-08 


  • Tark, M., Tover, A., Koorits, L., Tegova, R., & Kivisaar, M. (2008). Dual role of NER in mutagenesis in Pseudomonas putida. DNA Repair, 7(1), 20-30. DOI: 10.1016/j.dnarep.2007.07.008 


  • Tark, M. (2009). Mutagenic potential of DNA damage repair and tolerance mechanisms under starvation stress Tartu: Tartu University Press
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