Photographer: Martijn Rep

dr. M. (Martijn) Rep

  • Faculty of Science
  • Visiting address
    Science Park A
    Science Park 904  Amsterdam
    Room number: C2.219
  • Postal address:
    Postbus  94215
    1090 GE  Amsterdam
    T: 0205257764
    T: 0205255151

Research interests

Within the Molecular Plant Pathology group of the Swammerdam Institute for Life Sciences, my group aims to uncover the molecular basis of pathogenicity of the plant-pathogenic fungus Fusarium oxysporum . This fungus causes wilt disease or root/bulb-rot in many plant species of agricultural and horticultural importance.
This includes the identification and charaterization of genes required for pathogenicity, as well as the identification and molecular analysis of effectors : proteins secreted during colonization of host plants. Some of the latter proteins are required for full virulence. Some are recognized in resistant plants carrying a matching Resistance gene , in which case they can be referred to asavirulence factors.
Effector genesreside in lineage-specific chromosomes and chromosomal regions in the genome of F. oxysporum . These chromosomes can transfer between clonal lines and we are studying the mechanisms underlying this unique process.
Whenever our research yields leads for improved control of these diseases we pursue collaboration with the revelant sectors in society.


After graduating in molecular biology at the University of Amsterdam, I worked as a PhD student in the lab of Molecular Biology headed by Prof. Leslie Grivell. In 1996, I defended my thesis on the role of proteases in mitochondrial biogenesis in the yeast Saccharomyces cerevisiae .
I then moved to Leuven, Belgium, where I worked as a postdoc in the lab of Prof. Johan Thevelein on the response of yeast to osmotic stress, primarily dealing with regulation of transcription.
In 1999, I came back to Amsterdamto work for a year in the lab of Prof. Henk Tabak, setting up microarray technology to studyyeast's transcriptional response to fatty acids.
In 2000 I obtained my current position in the Plant Pathology group of Prof. Ben Cornelissen. From 2002 to 2007 I was research fellow of the Royal Dutch Society for Arts and Sciences.
In 2010 I obtained a NWO-Vici grant to study chromosome transfer in fungi.

Group members

Petra Houterman ,
Proteomics, F. oxysporum effector genes


Nico Tintor, post-doc

Effector entry into plant cells



Lotje van der Does, post-doc
Communication between core and accessory genomes of F. oxysporum

Sarah Schmidt, post-doc
Comparative genomics of F. oxysporum


Like Fokkens, post-doc, bioinformatician

Evolution of the accessory genome of F. oxysporum

Peter van Dam
, PhD student
Identification and characterization of effectors of F. oxysporum pathogenic to various host plants
[NGI Zenith]


Sri Widinugraheni, PhD student

Identification and characterization of effectors of F. oxysporum f.sp. cubense



Mara de Sain, PhD student
Targets of effectors of F. oxysporum in tomato


Ido Vlaardingerbroek, PhD student
Chromosome transfer in F. oxysporum

Shermineh Shahi, PhD student
Chromosome transfer in F. oxysporum

Previous group members

Patrick Mak , technician
Proteomic analysis of phloem sap [TTI Green Genetics]

Vladimir Krasikov , Post-doc
Functional analysis of the tomato xylem sap protein XSP10
Caroline Michielse , Post-doc (sponsored by Utopa foundation)
Insertional mutagenesis of F. oxysporum, pathogenicity genes
Linda Reijnen , technician
Insertional mutagenesis of F. oxysporum, pathogenicity genes
Wilfried Jonkers , PhD student
Analysis of FRP1 , metabolic requirements of root invasion
Lotje van der Does (PhD student)
Analysis of the effector and avirulence factor Six1, horizontal chromosome transfer
Ringo van Wijk , technician (sponsored by Utopa foundation) Insertional mutagenesis of F.oxysporum

Other collaborators within Plant pathology, SILS, UvA

Prof. Ben J.C. Cornelissen , head of Molecular Plant Pathology
Dr. Frank Takken and his team members (see link below)
Dr. Harrold van den Burg and his team members (see link below)

Higher education for baha'is in Iran

Since 1979 Baha'is in Iran have been prevented from entering higher education unless they officially identify themselves as Muslims (or as follower of another recognized religion). In 2006 for the first time since the Islamic revolution Baha'is have been allowed to enroll in universities, only to be expelled as soon as it became clear that they were Baha'is. Contact me in case you want to help raise awareness of this situation.


  • Van der Does, D., Boutrot, F., Engelsdorf, T., Rhodes, J., McKenna, J. F., Vernhettes, S., ... Zipfel, C. (2017). The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and biotic stresses. PLOS Genetics, 13(6), e1006832. DOI: 10.1371/journal.pgen.1006832 [details]


  • Catanzariti, A-M., Do, H. T. T., Bru, P., de Sain, M., Thatcher, L. F., Rep, M., & Jones, D. A. (2016). The tomato I gene for Fusarium wilt resistance encodes an atypical leucine-rich repeat receptor-like protein whose function is nevertheless dependent on SOBIR1 and SERK3/BAK1. Plant Journal. DOI: 10.1111/tpj.13458 [details]
  • Chellappan, B. V., Fokkens, L., Houterman, P. M., Rep, M., & Cornelissen, B. J. C. (2016). Multiple evolutionary trajectories have led to the emergence of races in Fusarium oxysporum f. sp. lycopersici. Applied and Environmental Microbiology. DOI: 10.1128/AEM.02548-16 [details]
  • van Dam, P., Fokkens, L., Schmidt, S. M., Linmans, J. H. J., Kistler, H. C., Ma, L-J., & Rep, M. (2016). Effector profiles distinguish formae speciales of Fusarium oxysporum. Environmental Microbiology, 18(11), 4087-4102. DOI: 10.1111/1462-2920.13445 [details]
  • van der Does, C., Fokkens, L., Yang, A., Schmidt, S. M., Langereis, L., Lukasiewicz, J. M., ... Rep, M. (2016). Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes. PLOS Genetics, 12(11), e1006401. DOI: 10.1371/journal.pgen.1006401 [details] [PDF]
  • Shahi, S., Fokkens, L., Houterman, P. M., & Rep, M. (2016). Suppressor of fusion, a Fusarium oxysporum homolog of Ndt80, is required for nutrient-dependent regulation of anastomosis. Fungal Genetics and Biology, 95, 49-57. DOI: 10.1016/j.fgb.2016.08.005 [details] [PDF]
  • Zhang, L., Zhou, Z., Guo, Q., Fokkens, L., Miskei, M., Pócsi, I., ... Lin, M. (2016). Insights into Adaptations to a Near-Obligate Nematode Endoparasitic Lifestyle from the Finished Genome of Drechmeria coniospora. Scientific Reports, 6, [23122]. DOI: 10.1038/srep23122 [details / files]
  • Schmidt, S. M., Lukasiewicz, J., Farrer, R., van Dam, P., Bertoldo, C., & Rep, M. (2016). Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon. New Phytologist, 209(1), 307-318. DOI: 10.1111/nph.13584 [details]
  • Shahi, S., Beerens, B., Bosch, M., Linmans, J., & Rep, M. (2016). Nuclear dynamics and genetic rearrangement in heterokaryotic colonies of Fusarium oxysporum. Fungal Genetics and Biology, 91, 20-31. DOI: 10.1016/j.fgb.2016.03.003 [details / files]
  • Vlaardingerbroek, I., Beerens, B., Rose, L., Fokkens, L., Cornelissen, B. J. C., & Rep, M. (2016). Exchange of core chromosomes and horizontal transfer of lineage-specific chromosomes in Fusarium oxysporum. Environmental Microbiology, 18(11), 3702-3713. DOI: 10.1111/1462-2920.13281 [details]
  • Vlaardingerbroek, I., Beerens, B., Schmidt, S. M., Cornelissen, B. J. C., & Rep, M. (2016). Dispensable chromosomes in Fusarium oxysporum f.sp lycopersici. Molecular Plant Pathology, 17(9), 1455-1466. DOI: 10.1111/mpp.12440 [details / files]
  • Chellapan, B. V., van Dam, P., Rep, M., Cornelissen, B. J. C., & Fokkens, L. (2016). Non-canonical Helitrons in Fusarium oxysporum. Mobile DNA, 7, [27]. DOI: 10.1186/s13100-016-0083-7 [details / files]


  • Gawehns, F., Ma, L., Bruning, O., Houterman, P. M., Boeren, S., Cornelissen, B. J. C., ... Takken, F. L. W. (2015). The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infection. Frontiers in Plant Science, 6, [967]. DOI: 10.3389/fpls.2015.00967 [details / files]
  • Shahi, S., Beerens, B., Manders, E. M. M., & Rep, M. (2015). Dynamics of the establishment of multinucleate compartments in Fusarium oxysporum. Eukaryotic Cell, 14(1), 78-85. DOI: 10.1128/EC.00200-14 [details / files]
  • Vlaardingerbroek, I., Beerens, B., Shahi, S., & Rep, M. (2015). Fluorescence Assisted Selection of Transformants (FAST): Using flow cytometry to select fungal transformants. Fungal Genetics and Biology, 76, 104-109. DOI: 10.1016/j.fgb.2015.02.003 [details]
  • de Sain, M., & Rep, M. (2015). The Role of Pathogen-Secreted Proteins in Fungal Vascular Wilt Diseases. International Journal of Molecular Sciences, 16(10), 23970-23993. DOI: 10.3390/ijms161023970 [details] [PDF]
  • Ma, L., Houterman, P. M., Gawehns, F., Cao, L., Sillo, F., Richter, H., ... Takken, F. L. W. (2015). The AVR2-SIX5 gene pair is required to activate I-2-mediated immunity in tomato. New Phytologist, 208(2), 507-518. DOI: 10.1111/nph.13455 [details]


  • Gawehns, F., Houterman, P. M., Ait Ichou, F., Michielse, C. B., Hijdra, M., Cornelissen, B. J. C., ... Takken, F. (2014). The Fusarium oxysporum effector Six6 contributes to virulence and suppresses I-2 mediated cell death. Molecular Plant-Microbe Interactions, 27(4), 336-348. DOI: 10.1094/MPMI-11-13-0330-R [details]
  • Jonkers, W., Xayamongkhon, H., Haas, M., Olivain, C., van der Does, H. C., Broz, K., ... Kistler, H. C. (2014). EBR1 genomic expansion and its role in virulence of Fusarium species. Environmental Microbiology, 16(7), 1982-2003. DOI: 10.1111/1462-2920.12331 [details]
  • Kang, S., Demers, J., Jimenez-Gasco, M. M., & Rep, M. (2014). Fusarium oxysporum. In R. A. Dean, A. Lichens-Park, & C. Kole (Eds.), Genomics of plant-associated fungi and oomycetes: dicot pathogens (pp. 99-119). Heidelberg: Springer. DOI: 10.1007/978-3-662-44056-8_5 [details]


  • Schmidt, S. M., Houterman, P. M., Schreiver, I., Ma, L., Amyotte, S., Chellappan, B., ... Rep, M. (2013). MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum. BMC Genomics, 14, 119. DOI: 10.1186/1471-2164-14-119 [details / files]
  • Kistler, H. C., Rep, M., & Ma, L-J. (2013). Structural dynamics of Fusarium genomes. In D. W. Brown, & R. H. Proctor (Eds.), Fusarium: genomics, molecular and cellular biology (pp. 31-41). Norwich, UK: Caister Academic Press. [details]


  • Gonorazky, G., Laxalt, A. M., Dekker, H. L., Rep, M., Munnik, T., Testerink, C., & de la Canal, L. (2012). Phosphatidylinositol 4-phosphate is associated to extracellular lipoproteic fractions and is detected in tomato apoplastic fluid. Plant Biology, 14(1), 41-49. DOI: 10.1111/j.1438-8677.2011.00488.x [details]
  • Ma, L-J., Kistler, H. C., & Rep, M. (2012). Evolution of Plant Pathogenicity in Fusarium Species. In L. D. Sibley, B. J. Howlett, & J. Heitman (Eds.), Evolution of Virulence in Eukaryotic Microbes (pp. 485-500). Hoboken, NJ: Wiley-Blackwell. [details]
  • Michielse, C. B., Reijnen, L., Olivain, C., Alabouvette, C., & Rep, M. (2012). Degradation of aromatic compounds through the beta-ketoadipate pathway is required for pathogenicity of the tomato wilt pathogen Fusarium oxysporum f. sp. lycopersici. Molecular Plant Pathology, 13(9), 1089-1100. DOI: 10.1111/j.1364-3703.2012.00818.x [details]
  • Lievens, B., Hanssen, I. M., & Rep, M. (2012). Recent Developments in the Detection and Identification of Formae Speciales and Races of Fusarium oxysporum: From Pathogenicity Testing to Molecular Diagnostics. In M. L. Gullino, J. Katan, & A. Garibaldi (Eds.), Fusarium Wilts of Greenhouse Vegetable and Ornamental Crops (pp. 47-55). St. Paul, MN: American Phytopathological Society. [details]
  • Rodríguez-Ortiz, R., Michielse, C., Rep, M., Limón, M. C., & Avalos, J. (2012). Genetic basis of carotenoid overproduction in Fusarium oxysporum. Fungal Genetics and Biology, 49(9), 684-696. DOI: 10.1016/j.fgb.2012.06.007 [details]


  • Jonkers, W., van Kan, J. A. L., Tijm, P., Lee, Y-W., Tudzynski, P., Rep, M., & Michielse, C. B. (2011). The FRP1 F-box gene has different functions in sexuality, pathogenicity and metabolism in three fungal pathogens. Molecular Plant Pathology, 12(6), 548-563. DOI: 10.1111/j.1364-3703.2010.00689.x [details]
  • Krasikov, V., Dekker, H. L., Rep, M., & Takken, F. L. W. (2011). The tomato xylem sap protein XSP10 is required for full susceptibility to Fusarium wilt disease. Journal of Experimental Botany, 62(3), 963-973. DOI: 10.1093/jxb/erq327 [details]
  • Chakrabarti, A., Rep, M., Wang, B., Ashton, A., Dodds, P., & Ellis, E. (2011). Variation in potential effector genes distinguishing Australian and non-Australian isolates of the cotton wilt pathogen Fusarium oxysporum f.sp. vasinfectum. Plant Pathology, 60(2), 232-243. DOI: 10.1111/j.1365-3059.2010.02363.x [details]


  • Ament, K., Krasikov, V., Allmann, S., Rep, M., Takken, F. L. W., & Schuurink, R. C. (2010). Methyl salicylate production in tomato affects biotic interactions. Plant Journal, 62(1), 124-134. DOI: 10.1111/j.1365-313X.2010.04132.x [details]
  • Ma, L-J., van der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M. J., Di Pietro, A., ... Rep, M. (2010). Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature, 464(7287), 367-373. DOI: 10.1038/nature08850 [details] [PDF]
  • Rep, M., & Kistler, H. C. (2010). The genomic organization of plant pathogenicity in Fusarium species. Current Opinion in Plant Biology, 13(4), 420-426. DOI: 10.1016/j.pbi.2010.04.004 [details]
  • Takken, F., & Rep, M. (2010). The arms race between tomato and Fusarium oxysporum. Molecular Plant Pathology, 11(2), 309-314. DOI: 10.1111/j.1364-3703.2009.00605.x [details]
  • Takken, F., van Ooijen, G., Lukasik, E., Ma, L., Gawehns, F., Houterman, P., & Rep, M. (2010). How to resist a tomato resistance gene? In H. Antoun, T. Avis, L. Brisson, D. Prévost, & M. Trepanier (Eds.), Proceedings of the 14th International Congress on Molecular Plant-Microbe Interactions: Quebec City, Quebec, Canada, July 19-23, 2009 (Biology of plant-microbe interactions; Vol. 7). St. Paul, MN: International Society for Molecular Plant-Microbe Interactions. [details]


  • Houterman, P. M., Ma, L., van Ooijen, G., de Vroomen, M. J., Cornelissen, B. J. C., Takken, F. L. W., & Rep, M. (2009). The effector protein Avr2 of the xylem-colonizing fungus Fusarium oxysporum activates the tomato resistance protein I-2 intracellularly. Plant Journal, 58(6), 970-978. DOI: 10.1111/j.1365-313X.2009.03838.x [details]
  • Jonkers, W., Andrade Rodrigues, C. D., & Rep, M. (2009). Impaired colonization and infection of tomato roots by the Δfrp1 mutant of Fusarium oxysporum correlates with reduced CWDE gene expression. Molecular Plant-Microbe Interactions, 22(5), 507-518. DOI: 10.1094/MPMI-22-5-0507 [details]
  • Jonkers, W., & Rep, M. (2009). Lessons from fungal F-box proteins. Eukaryotic Cell, 8(5), 677-695. DOI: 10.1128/EC.00386-08 [details]
  • Jonkers, W., & Rep, M. (2009). Mutation of CRE1 in Fusarium oxysporum reverts the pathogenicity defects of the FRP1 deletion mutant. Molecular Microbiology, 74(5), 1100-1113. DOI: 10.1111/j.1365-2958.2009.06922.x [details]
  • Michielse, C. B., van Wijk, R., Reijnen, L., Cornelissen, B. J. C., & Rep, M. (2009). Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis. Genome Biology, 10(1), R4. DOI: 10.1186/gb-2009-10-1-r4 [details] [PDF]
  • Michielse, C. B., van Wijk, R., Reijnen, L., Manders, E. M. M., Boas, S., Olivain, C., ... Rep, M. (2009). The nuclear protein Sge1 of Fusarium oxysporum is required for parasitic growth. PLoS Pathogens, 5(10), e1000637. DOI: 10.1371/journal.ppat.1000637 [details] [PDF]
  • Michielse, C. B., & Rep, M. (2009). Pathogen profile update: Fusarium oxysporum. Molecular Plant Pathology, 10(3), 311-324. DOI: 10.1111/J.1364-3703.2009.00538.X [details]
  • Coleman, J. J., Rounsley, S. D., Rodriguez-Carres, M., Kuo, A., Wasmann, C. C., Grimwood, J., ... VanEtten, H. D. (2009). The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion. PLOS Genetics, 5(8), e1000618. DOI: 10.1371/journal.pgen.1000618 [details] [PDF]
  • Lievens, B., van Baarlen, P., Verreth, C., Van Kerckhove, S., Rep, M., & Thomma, B. P. H. J. (2009). Evolutionary relationships between Fusarium oxysporum f. sp. lycopersici and F. oxysporum f. sp. radicis-lycopersici isolates inferred from mating type, elongation factor-1α and exopolygalacturonase sequences. Mycological Research, 113(10), 1181-1191. DOI: 10.1016/j.mycres.2009.07.019 [details]
  • Lievens, B., Houterman, P. M., & Rep, M. (2009). Effector gene screening allows unambiguous identification of Fusarium oxysporum f. sp. lycopersici races and discrimination from other formae speciales. FEMS Microbiology Letters, 300(2), 201-215. DOI: 10.1111/j.1574-6968.2009.01783.x [details]


  • Houterman, P. M., Cornelissen, B. J. C., & Rep, M. (2008). Suppression of plant resistance gene-based immunity by a fungal effector. PLoS Pathogens, 4(5), e1000061. DOI: 10.1371/journal.ppat.1000061 [details] [PDF]
  • van der Does, H. C., Lievens, B., Claes, L., Houterman, P. M., Cornelissen, B. J. C., & Rep, M. (2008). The presence of a virulence locus discriminates Fusarium oxysporum isolates causing tomato wilt from other isolates. Environmental Microbiology, 10(6), 1475-1485. DOI: 10.1111/j.1462-2920.2007.01561.x [details]
  • van der Does, H. C., Duyvesteijn, R. G. E., Goltstein, P. M., van Schie, C. C. N., Manders, E. M. M., Cornelissen, B. J. C., & Rep, M. (2008). Expression of effector gene SIX1 of Fusarium oxysporum requires living plant cells. Fungal Genetics and Biology, 45(9), 1257-1264. DOI: 10.1016/j.fgb.2008.06.002 [details] [PDF]
  • Lievens, B., Rep, M., & Thomma, B. P. H. J. (2008). Recent developments in the molecular discrimination of formae speciales of Fusarium oxysporum. Pest Management Science, 64(8), 781-788. DOI: 10.1002/ps.1564 [details]


  • Houterman, P. M., Speijer, D., Dekker, H. L., de Koster, C. G., Cornelissen, B. J. C., & Rep, M. (2007). The mixed proteome of Fusarium oxysporum-infected tomato xylem vessels. Molecular Plant Pathology, 8, 215-221. DOI: 10.1111/j.1364-3703.2007.00384.x [details]
  • van der Does, H. C., & Rep, M. (2007). Virulence genes and the evolution of plant pathogenicity in fungi. Molecular Plant-Microbe Interactions, 20, 1175-1182. DOI: 10.1094/MPMI-20-10-1175 [details]
  • Cuomo, C. A., Güldener, U., Xu, J-R., Trail, F., Turgeon, B. G., Di Pietro, A., ... Kistler, H. C. (2007). The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science, 317(5843), 1400-1402. DOI: 10.1126/science.1143708 [details]


  • Rep, M., Duyvesteijn, R. G. E., Gale, L., Usgaard, T., Cornelissen, B. J. C., Ma, L-J., & Ward, T. J. (2006). The presence of GC-AG introns in N. crassa and other euascomycetes determined from analyses of complete genomes: implications for automated gene prediction. Genomics, 87, 338-347. DOI: 10.1016/j.ygeno.2005.11.014 [details]
  • Rep, M., van der Does, H. C., Meijer, M., Houterman, P. M., Dekker, H. L., Speijer, D., ... Cornelissen, B. J. C. (2006). Secrets of xylem colonization- The xylem sap proteome of tomato infected with Fusarium oxysporum IS-MPM1. In C. Quinto, S. Lopes-Lara Sanchez, & O. Geiger (Eds.), Biology of Plant-Microbe Interactions. (pp. 597-601) [details]
  • Kehr, J., & Rep, M. (2006). Protein extraction from xylem and phloem sap Plant Proteomics: Methods and Protocols. In V. Mechin, C. Damerval, M. Zivy, & H. Thiellement (Eds.), Methods in Molecular Biology (pp. 27-36). (355). Humana Press. [details]
  • van Loon, L. C., Rep, M., & Pieterse, C. (2006). Significance of inducible defense-related proteins in infected plants. Annual Review of Phytopathology, 44, 7.1-7.28. DOI: 10.1146/annurev.phyto.44.070505.143321 [details]


  • Duyvesteijn, R. G. E., van Wijk, R., Boer, Y., Rep, M., Cornelissen, B. J. C., & Haring, M. A. (2005). Frp1 is a Fusarium oxysporum F-box protein required for pathogenicity on tomato. Molecular Microbiology, 57(4), 1051-1063. DOI: 10.1111/j.1365-2958.2005.04751.x [details]
  • Rep, M. (2005). Small proteins of plant-pathogenic fungi secreted during host colonization. FEMS Microbiology Letters, 253, 19-27. DOI: 10.1016/j.femsle.2005.09.014 [details]
  • Rep, M., Meijer, M., Houterman, P. M., van der Does, H. C., & Cornelissen, B. J. C. (2005). Fusarium oxysporum evades the 1-3-meidated resistance without altering the matching avirulence gene. Molecular Plant-Microbe Interactions, 18(1), 15-23. DOI: 10.1094/MPMI-18-0015 [details]
  • Rep, M., van der Does, H. C., & Cornelissen, B. J. C. (2005). Drifter, a novel, low copy hAT-like transposon in Fusarium oxysporum is activated during starvation. Fungal Genetics and Biology, 42, 546-553. DOI: 10.1016/j.fgb.2005.03.007 [details]
  • Leon-Kloosterziel, K. M., Verhagen, B. W. M., Keurentjes, J. J. B., Rep, M., van Loon, L. C., & Pieterse, C. M. J. (2005). Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Molecular Biology, 57, 731-748. DOI: 10.1007/s11103-005-3097-y [details]


  • Rep, M., van der Does, H. C., Meijer, M., van Wijk, R., Houterman, P. M., Dekker, H. L., ... Cornelissen, B. J. C. (2004). A small, cysteine-rich protein secreted by Fusarium oxysporum during colonization of xylem vessels is required for 1-3-mediated resistance in tomato. Molecular Microbiology, 53, 1373-1383. DOI: 10.1111/j.1365-2958.2004.04177.x [details]


  • Rep, M., Dekker, H. L., Vossen, J. H., de Boer, A. D., Houterman, P. M., de Koster, C. G., & Cornelissen, B. J. C. (2003). A tomato xylem sap protein represents a new family of small cysteine-rich proteins with structural similarity to lipid transfer proteins. FEBS Letters, 534, 82-86. DOI: 10.1016/S0014-5793(02)03788-2 [details]
  • Teunissen, H. A. S., Rep, M., Houterman, P. M., Cornelissen, B. J. C., & Haring, M. A. (2003). Construction of a mitotic linkage map of Fusarium oxysporum based on Foxy-AFLPs. Molecular Genetics and Genomics, 269, 215-226. DOI: 10.1007/s00438-003-0825-3 [details]


  • Rep, M., Dekker, H. L., Vossen, J. H., de Boer, A., Houterman, P. M., Speijer, D., ... Cornelissen, B. J. C. (2002). Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato. Plant Physiology, 130, 904-917. DOI: 10.1104/pp.007427 [details]
  • Koerkamp, M. G., Rep, M., Bussemaker, H. J., Hardy, G. P. M. A., Mul, A., Piekarska, K., ... Tabak, H. F. (2002). Dissection of Transient Oxidative Stress Response in Saccharomyces cerevisiae by Using DNA Microarrays. Molecular Biology of the Cell, 13, 2783-2794. DOI: 10.1091/mbc.E02-02-0075 [details]


  • Rep, M., Proft, M., Remize, F., Tamás, M., Serrano, R., Thevelein, J. M., & Hohmann, S. (2001). The Saccharomyces cerevisiae Sko1p transcription factor mediates HOG pathway-dependent osmotic regulation of a set of genes encoding enzymes implicated in protection from oxidative damage. Molecular Microbiology, 40, 1067-1083. DOI: 10.1046/j.1365-2958.2001.02384.x [details]


  • Rep, M., Krantz, M., Thevelein, J. M., & Hohmann, S. (2000). The transcriptional response of Saccharomyces cerevisiae to osmotic shock. Hot1p and Msn2p/Msn4p are required for the induction of subsets of high osmolarity glycerol pathway-dependent genes. The Journal of Biological Chemistry, 275, 8290-8300. DOI: 10.1074/jbc.275.12.8290 [details]
  • Tamas, M. J., Rep, M., Thevelein, J. M., & Hohmann, S. (2000). Stimulation of the yeast high osmolarity glycerol (HOG) pathway: evidence for a signal generated by a change in turgor rather than by water stress. FEBS Letters, 472, 159-165. DOI: 10.1016/S0014-5793(00)01445-9 [details]


  • Suzuki, C. K., Rep, M., van Dijl, J. M., Suda, K., Grivell, L. A., & Schatz, G. (1997). ATP-dependent proteases that also chaperone protein biogenesis. Trends in Biochemical Sciences, 22, 118-123. DOI: 10.1016/S0968-0004(97)01020-7 [details]


  • Guelin, E. J-M., Rep, M., & Grivell, L. A. (1996). Afg3p, a mitochondrial atp-dependent metalloprotease, is involved in degradation of mitochondrially-encoded cox1, cox3, cob, su6, su8 and su9 subunits of the inner membrane complex-III, complex-IV and complex-V. FEBS Letters, 381, 42-46. DOI: 10.1016/0014-5793(96)00074-9 [details] [PDF]
  • Rep, M., Nooy, J., Guelin, E. J-M., & Grivell, L. A. (1996). Three genes for mitochondrial proteins suppress null-mutations in both Afg3 and Rca1 when over-expressed. Current Genetics, 30, 206-211. DOI: 10.1007/s002940050122 [details] [PDF]
  • Rep, M., van Dijl, J. M., Suda, K., Schatz, G., Grivell, L. A., & Suzuki, C. K. (1996). Promotion of mitochondrial membrane complex assembly by a proteiolytically inactive yeast lon. Science, 274, 103-106. DOI: 10.1126/science.274.5284.103 [details] [PDF]
  • Rep, M., & Grivell, L. A. (1996). MBA1 encodes a mitochondrial membrane-associated protein required for biogenesis of the respiratory chain. FEBS Letters, 388, 185-188. DOI: 10.1016/0014-5793(96)00543-1 [details]
  • Rep, M., & Grivell, L. A. (1996). The role of protein degradation in mitochondrial function and biogenesis. Current Genetics, 30, 267-380. [details] [PDF]


  • van der Does, H. C., & Rep, M. (2012). Horizontal transfer of supernumerary chromosomes in fungi. In M. D. Bolton, & B. P. H. J. Thomma (Eds.), Plant fungal pathogens: methods and protocols (pp. 427-437). (Methods in molecular biology; No. 835). New York: Humana Press. DOI: 10.1007/978-1-61779-501-5_26 [details]


  • Grivell, L. A., Elzinga, S. D. J., Guelin, E. J-M., van Oosterum, K., Rep, M., & van der Spek, J. C. (1995). Nucleo-mitochondrial crosstalk in mitochondrial biogenesis. In Proc. 17th Int. Conf. Yeast Genetics and Molecular Biology. (pp. S20-S20). Lissabon, Portugal. [details]
  • Guelin, E. J-M., Rep, M., & Grivell, L. A. (1995). Functional analysis of the yeast Afg3p, an ATP-dependent metalloprotease. In Proc. 1st Conf on the AAA family of ATPases. (pp. 30-30). Gif-sur-Yvette, Frankrijk. [details]
  • Guelin, E. J-M., Rep, M., & Grivell, L. A. (1995). Role of the yeast Afg3p, an ATP-dependent metalloprotease, in mitochondrial biogenesis. In Proc. 1st Conf. on the AAA Family of ATPases. (pp. 23-23). Gif-sur-Yvette, Frankrijk. [details]


  • Grivell, L. A., Elzinga, S. D. J., van Oosterum, K., Guelin, E. J-M., Rep, M., & van der Spek, J. C. (1994). Novel features of mitochondrial gene expression in yeast. In 4th Spanish-Portuguese Congress of Biochemistry.. (pp. 59-59). Salamanca. [details]
  • Guelin, E. J-M., Rep, M., & Grivell, L. A. (1994). Sequence of the AFG3 gene encoding a new member of the FtsH/Yme1/Tma subfamily of the AAA-protein family. Yeast, 10, 1389-1394. DOI: 10.1002/yea.320101016 [details]
  • Rep, M., Guelin, E. J-M., & Grivell, L. A. (1994). A new member of the AAA protein family, AFG3, is involved in the synthesis or assembly of mitochondrially encoded subunits of respiratory enzyme complexes. In Int. Meeting on Yeast Genetics and Mol. Biology.. (pp. 74-74). Seattle, USA. [details]


  • Pel, H. J., Rep, M., Dubbink, H. J., & Grivell, L. A. (1993). Single-Point Mutations in Domain-Ii of the Yeast Mitochondrial Release Factor Mrf-1 Affect Ribosome Binding. Nucleic Acids Research, 21(23), 5308-5315. DOI: 10.1093/nar/21.23.5308 [details]


  • Pel, H. J., Maat, C., Rep, M., & Grivell, L. A. (1992). The yeast nuclear gene MRF1 encodes a mitochondrial peptide chain release factor and cures several mitochondrial RNA splicing defects. Nucleic Acids Research, 20(23), 6339-6346. DOI: 10.1093/nar/20.23.6339 [details]
  • Pel, H. J., Rep, M., & Grivell, L. A. (1992). Sequence comparison of new prokaryotic and mitochondrial members of the polypeptide chain release factor family predicts a five-domain model for release factor structure. Nucleic Acids Research, 20(17), 4423-4428. DOI: 10.1093/nar/20.17.4423 [details]


  • Rep, M. (1996). The Role of ATP-dependentProteases in Mitochondrial Biogenesis Enschede: Febodruk [details]
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